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  • Blog post: Linux Cluster Institute Workshop at OU created by
    Mar 25
  • Blog post: Grants of Interest part 5 created by
    Mar 20
  • Blog post: Jive Communications First Sponsor for 2015 Annual Meeting created by
    Mar 05
  • Blog post: Grants of Interest part 4 created by
    Mar 03
  • Blog post: OU Hosts From Computational Biophysics to Systems Biology (CBSB2015) created by
    Mar 03
  • Blog post: 2015 LCI Workshop at OU created by
    Feb 26
  • Blog post: MST Hosting Teaching and Learning Technology Conference created by
    Feb 26
  • Blog post: UMKC Hosting DRCN Conference created by
    Feb 10
  • Blog post: University of Arkansas CIO Search created by
    Jan 29
  • Blog post: Disaster Recovery Survey, Please Respond created by
    Jan 28
  • Blog post: Student Awards to Attend Annual Meeting created by
    Jan 26
  • Blog post: Upcoming Proposal Preparation Webinars created by
    Jan 22
  • Blog post: Internet2 Seeking Campuses to Visit to Assist with Campus Cyberinfrastructure created by
    Jan 22
  • Blog post: Applications for DataQ Editorial Team Due January 30th! created by
    Jan 20
  • Blog post: Big Bang Machine on TV created by
    Jan 16
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      2015/03/25
    Linux Cluster Institute Workshop at OU
    Last Changed by Kate Adams, Mar 25, 2015 14:43

    Registration is now open for this year's Linux Cluster Institute!  The LCI Workshop will be May 18-22, 2015, in Norman, Oklahoma, on the campus of The University of Oklahoma. Cost is only $495 if you register by April 24 ($600 after that date).

    This is a great opportunity for HPC sysadmins in the GPN region for professional development!

    If you are a Linux system administrator new to HPC, this is the workshop for you!
    In just five days you will: learn HPC system administration concepts and 
    technologies and how to apply them, get hands-on skills building a small test 
    cluster in lab sessions, hear real-life stories and get to ask experts questions in 
    panel discussions. Plus you’ll create a personal network of other professionals in 
    the HPC field.
    If you are a Linux system administrator new to HPC, this is the workshop for you! In just five days you will:

    • Learn HPC system administration concepts and technologies and how to apply them. 
    • Get hands-on skills building a small test cluster in lab sessions. 
    • Hear real-life stories and get to ask experts questions in panel discussions. 
    • Plus you’ll create a personal network of other professionals in the HPC field.

    Accommodations: http://symposium2014.oscer.ou.edu/hotels.html. Workshop participants can reserve a room by visiting:  http://www.visitnorman.com/lodging/

    Area Attractions: http://www.visitnorman.com/attractions/

    Directions: http://symposium2014.oscer.ou.edu/travel.html     

    Workshop will be held here:

    Thurman J. White Forum Building
    1704 Asp Avenue, Norman, OK 73072
    Phone: [405-325-3603] ~ Fax [405-325-7589]
    conferenceservices@ou.edu

    Parking

    Forum Layout

    OU Campus map for Forum location

    BREAKFAST, LUNCH, SNACKS AND BEVERAGES PROVIDED DAILY

    TENTATIVE AGENDA -- SUBJECT TO CHANGE WITHOUT NOTICE

    Monday

    8:00am: Breakfast
    8:30am: Welcome and Open
    9:00am: Lecture: Intro to HPC
    10:00am: Lab: Intro to HPC exercise
    10:30am: Break
    11:00am: Lecture: Intro to MPI
    12:00noon: Working Lunch/Lab: Intro to MPI exercise
    1:00pm: Lecture: Cluster Stack Basics
    3:00pm: Break
    3:30pm: Lab: Build-a-Cluster: Quick Introduction to EC2
    3:45pm: Lab: Build-a-Cluster: Head Node Setup
    7:30pm: TOUR: OU Data Center

    Tuesday

    8:00am: Breakfast
    8:30am: Lecture: Intro to Networking
    9:00am: Lecture: HPC Storage Part I
    10:30am: Break
    11:00am: Lab: Build-a-Cluster: Storage Server
    12:00noon: Lunch
    1:00pm: Lecture: HPC Storage Part II
    2:00pm: Lecture: Introduction to Configuration Management
    3:00pm: Break
    3:30pm: Lab: Build-a-Cluster: Compute Nodes
    4:30pm: Lecture: Node Health Check

    Wednesday

    8:00am: Breakfast
    8:30am: Lecture: Scheduling & Resource Management Part I
    10:30am: Break
    11:00am: Lab: Build-a-Cluster: Install Scheduler on Head Node
    12:00noon: Lunch
    1:00pm: Lecture: Scheduling & Resource Management Part II
    2:00pm: Lab: Build-a-Cluster: Run application via scheduler Part I
    3:00pm: Break
    3:30pm: Lecture: HPC User Support
    4:30pm: Lab: Build-a-Cluster: Run application via scheduler Part II

    Thursday

    8:00am: Breakfast
    8:30am: Lecture: Networking
    10:00am: Panel/Roundtable: Hardware
    10:30am: Break
    11:00am: Lecture: Third-Party Software Management
    12:00noon: Lunch
    1:00pm: Lecture: Account Management
    2:30pm: Panel/Roundtable: Software
    3:00pm: Break
    3:30pm: Lecture: Monitoring
    4:30pm: Hadoop

    Friday

    8:00am: Breakfast
    8:30am: Lecture: ADVANCED TOPIC to be announced
    10:00am: Panel/Roundtable: People
    10:30am: Break
    11:00am: Wrap-up Discussion and Q&A
    12:00noon: Box Lunch and Adjourn

    Posted at Mar 25, 2015 by Kate Adams 0 Comments
      2015/03/20
    Grants of Interest part 5
    Last Changed by Kate Adams, Mar 20, 2015 10:01

    Dear Colleague Letter: Future Directions for NSF Advanced Computing Infrastructure (ACI)  This funds  conferences to discuss future needs of cyberinfrastructure. Example conference topics include: scientific frontiers that are limited by capabilities of today's computational ecosystem and use of cloud computing systems for advancing science and education.  See link for more information.

    Posted at Mar 20, 2015 by Kate Adams 0 Comments
      2015/03/05
    Jive Communications First Sponsor for 2015 Annual Meeting
    Last Changed by Kate Adams, Mar 05, 2015 13:18

    Earlier this week, Jive Communications, Inc became the first confirmed 2015 Annual Meeting sponsor at the Platinum level.  Thank you very much, Jive!

    Posted at Mar 05, 2015 by Kate Adams 0 Comments
      2015/03/03
    Grants of Interest part 4
    Last Changed by Kate Adams, Mar 03, 2015 11:40

    NSF 15-549, Cybersecurity Innovation for Cyberinfrastructure. $500,000 - $5,000,000 awards.

    NSF 15-544, Critical Techniques and Technologies for Advancing Foundations and Applications of Big Data . Big awards! ($600,000-$2,000,000).  This is for testing and developing theories and developing working solutions. Requires collaboration between disciplines.

    Posted at Mar 03, 2015 by Kate Adams 0 Comments
    OU Hosts From Computational Biophysics to Systems Biology (CBSB2015)
    Last Changed by Kate Adams, Mar 03, 2015 09:24

    From Lilian Chooback, Ron L Halterman, Ulrich H.E. Hansmann, and Franklin A. Hays of University of Oklahoma

    Dear colleague,

    This is the second announcement of the upcoming workshop "From Computational Biophysics to Systems Biology (CBSB2015)" which will take place at the SAMIS Education Center of the University of Oklahoma Health Science Center in Oklahoma City, OK (USA) on May 17-19, 2015.

    Details on the workshop can be found below, or at http://www.hansmann-lab.com/cbsb15

    As in previous years, the workshop aims to bring together experts from physics, biology, and computer science to discuss current trends in computational biophysics and systems biology. Topics of CBSB2015 will include folding and aggregation, protein-protein complexes, supramolecular assemblies, cellular environments and interaction networks.

    Confirmed Keynote Speakers:

    * Philip Bourne (National Institutes of Health)
    * Ken Dill (Stony Brook University)
    * Jose Onuchic (Rice University)

    Confirmed Invited Speakers:

    * Pradipta Bandyopadhyay (Jawaharlal Nehru University)
    * Robert Best (National Institutes of Health)
    * Carlos Camacho (University of Pittsburgh)
    * Alemayehu Gorfe (University of Texas Health Sciences Houston)
    * Daisuke Kihara (Purdue University)
    * Maria Kurnikova (Carnegie Mellon University
    * Ruth Nussinov (National Institutes of Health)
    * Wei Wang (Nanjing University)
    * Guanhong Wei (Fudan University)
    * Sichun Yang (Case Western University)

    We especially encourage participation by students and postdocs, and we expect to offer financial support for selected students and postdocs on a competitive basis. For details, see the website.

    The registration deadline is April 15 to be considered for an oral or poster presentation. Acceptance letters and notifications of fellowship awards will be send out by April 22, 2015.

    The registration fee is $100 and has to be paid on site.

    Please circulate this announcement among your colleagues, students, and postdocs; and contact us with any questions you might have by sending email to cbsb15@ou.edu.

    With best regards,

    Lilian Chooback
    Ron L Halterman
    Ulrich H.E. Hansmann
    Franklin A. Hays

    Posted at Mar 03, 2015 by Kate Adams 0 Comments
      2015/02/26
    2015 LCI Workshop at OU
    Last Changed by Kate Adams, Feb 26, 2015 13:28

    SAVE THE DATE!

    Linux Cluster Institute (LCI) Workshop
    Mon May 18 - Fri May 22, 2015
    University of Oklahoma, CCE Forum, Norman OK

    If you are a linux system administrator new to HPC, this is the workshop for you!

    In just five days you will:

    • learn HPC system administration concepts and technologies and how to apply them;
    • get hands-on skills building a small test cluster in lab sessions;
    • hear real-life stories and get to ask experts questions in panel discussions.

    For more information, see the LCI website:

    http://www.linuxclustersinstitute.org/workshops/

    Posted at Feb 26, 2015 by Kate Adams 0 Comments
    MST Hosting Teaching and Learning Technology Conference
    Last Changed by Kate Adams, Feb 26, 2015 13:24

    From Greg Smith, CIO of Missouri University of Science and Technology:

    We are hosting the Teaching and Learning Technology Conference, TLT,  March 12-13 here at the Missouri University of Science and Technology campus in Rolla, MO. This conference brings together many innovative professors in higher education along with their Instructional Designers, Developers and Technologists, plus many from K-12 who want to make sure their students are properly prepared for college. TLT does carry some Missouri S&T STEM influence but it only strengthens how EdTech is applied to the liberal arts community: An exciting area of development in the last year has been with the preparation of virtual labs for chemistry and biology.

    Plus TLT will be hosting a CanvasCon Event as part of the Conference.
    OH yes, did I mention that our TLT is FREE….

    The Keynote Speakers:

    Robbie K. Melton, Ph.D. --- Associate Vice Chancellor of Mobilization Emerging Technology; Tennessee Board of Regents,  “The Emergence of Mobile and Smart Devices: Is Your Device Smarter than You?”

    Jeff Schramm, Ph.D. --- Associate Professor of History & Political Science; Missouri S&T, “MOOC’s, LMS, ELI, PRR, CB&Q and EMD: What the history of technology can teach us about the future of higher education.”

    Posted at Feb 26, 2015 by Kate Adams 0 Comments
      2015/02/10
    UMKC Hosting DRCN Conference
    Last Changed by Kate Adams, Feb 10, 2015 11:49

    Deep Medhi, Chair is pleased to announce that UMKC is hosting DRCN (International Conference on the Design of Reliable Communication Networks) March 24-27, 2015* *in Kansas City at the UMKC campus. The web-site is www.drcn2015.org. March 1 is the deadline for early registration.

    The conference will have three keynote speakers:

    • Biswanath Mukherjee, University of California-Davis
    • Hiroshi Saito, NTT Labs, Japan
    • Robert Doverspike, AT&T Labs-Research, NJ

    Other highlights

    • Four tutorials March 24 (two in morning, two in afternoon)
    • 40 papers  presented in single-track sessions
    • Poster session and a panel. 
      The conference will be held at UMKC's Student Union, 5100 Cherry St, KCMO. Watch [the website] for a detailed program.

    GPN is a sponsor for this meeting.

    Posted at Feb 10, 2015 by Kate Adams 0 Comments
      2015/01/29
    University of Arkansas CIO Search
    Last Changed by Greg Monaco, Jan 29, 2015 12:06

    The University of Arkansas in Fayetteville is looking for a new CIO.  UARK is a great place to work and has a terrific team of folks who have been involved in GPN since its inception.  To learn more about the position and to apply or recommend a candidate, visit http://its.uark.edu/CIO/index.php.

    Posted at Jan 29, 2015 by Greg Monaco 0 Comments
      2015/01/28
    Disaster Recovery Survey, Please Respond
    Last Changed by Kate Adams, Jan 28, 2015 10:46
    Disaster Recovery Scheduled Testing Survey

    From Amy Metzger - IT Manager, Information Technology Services @ University of Nebraska, Lincoln:

    Information Technology Services at the University of Nebraska-Lincoln is investigating a proposal to our campus of two scheduled testing days per year for the practice of the recovery of our IT services.

    We are curious if any other campus has adopted and implemented this idea. If you could please have a representative from your campus fill out this short survey and submit it back to me by February 10. 2015, I would really appreciate it.

    https://www.surveymonkey.com/s/BNDZJKM

     Thank you for your participation!

    Posted at Jan 28, 2015 by Kate Adams 0 Comments
      2015/01/26
    Student Awards to Attend Annual Meeting
    Last Changed by Kate Adams, Jan 26, 2015 12:29

    Student Awards to Attend Annual Meeting

    GPN and GWLA promote graduate student scholarly research and graduate and undergraduate attendance at the Annual Meeting. See https://ksuconferences.com/gpn-gwla/.

    This year there are two categories of awards that cover the cost of student registration and two nights hotel stay (shared accommodations) for the Annual Meeting 2015 in Kansas City, Missouri.

    • Research Awards:  Research awards  acknowledge outstanding graduate student research projects in a cyberinfrastructure or data science related field. (Some example are: physics, chemistry, computer science, biology, genetics, engineering, library science, or geology.) Recipients are first author and will make either a 15 minute oral presentation or a poster presentation at the annual meeting.
    • Volunteer Awards:  Volunteer awards are for graduate or undergraduate students who are majoring in a cyberinfrastructure or data science related field.  (Some example are: physics, chemistry, computer science, biology, genetics, engineering, library science, or geology.)   Recipients will attend and assist with running of a portion of the conference.
    • To apply, submit either a Research Statement or a Volunteer statement and a reference letter.
    • Award winners have their registration fee waived and two nights paid for at the InterContinental Hotel in Kansas City, MO.
    • Eligibility: Graduate and undergraduate students from GPN and GWLA member institutions who are enrolled in the Spring 2015 semester. Two Research Awards for Outstanding Merit will be announced at the Annual Meeting.   These award recipients will receive an additional stipend.

    Detailed Instructions

    Research Award:  Research Statement

    Research currently under review for publication or ‘in press’ may be submitted.  Work with multiple authors may be submitted, as long as the applicant primarily designed and conducted the research. The reference letter (see below) must address this issue.

    Applicants must submit a 500 word summary of their research with the following sections:

    • Title
    • Project Significance/Theoretical Context
    • Methods
    • Results
    • Discussion/Interpretation.
    • May include three figures and/or tables with concise captions

    This 500 word cap doesn’t include literature cited, figures, or tables. The statement doesn’t have to use all 500 words.

    The Annual Meeting Program Committee has members from different cyberinfrastructure backgrounds, so applicants should write for a broad, scientifically literate audience and avoid excessive jargon or technical terms.  

    Volunteer Award:  Volunteer Statement

    To apply for the volunteer award, applicants submit a 500 word statement of interest in attending the Annual Meeting.  This statement should also include a summary of accomplishments and career goals.  

    Reference Letter

    A major professor or advisor must submit a reference letter to kate@greatplains.net. This letter should be submitted separately from the rest of the application. Beyond comments concerning the student’s general strengths, the letter must address the following:

    1. Research Award:  If the student can present the research project at the Annual Meeting; and the student's role in designing and conducting the research, especially in the case of collaborative research.
    2. Volunteer Award:  If the student can assist at the Annual Meeting and how attending will benefit the student.

    Evaluation criteria

    Members of the Program Committee will review and rank applications based on originality, quality, and presentation of the research and the advisor’s letter of support.  The proposals with the highest overall ranking will be awarded.  Two research proposals will be selected for special recognition with an additional financial award, announced at the Annual Meeting.

    Submissions

    Submit your research/volunteer statement in PDF format, electronically to kate@greatplains.net  by 11:59 p.m. Central Time on March 15th.  Applications that do not meet the above requirements or are received after the deadline will not be considered.  Applicants will be notified of the committee's decision around April 15th. Questions should be directed to kate@greatplains.net.

    Posted at Jan 26, 2015 by Kate Adams 0 Comments
      2015/01/22
    Upcoming Proposal Preparation Webinars
    Last Changed by Greg Monaco, Jan 22, 2015 15:26

    GPN will be presenting several webinars on NSF's CC-DNI program, beginning with an overview of the solicitation on Friday, January 30, at 10AM Central and followed by two proposal preparation webinars on Tuesday, February 3, and Thursday, February 5.  The latter two webinars will also be at 10AM Central time.

    You may learn more about each of these webinars and register to attend them at the GPN Event Catalog website:  https://events-na12.adobeconnect.com/content/connect/c1/1282664749/en/events/catalog.html.

    The presentations will be done by me, Greg Monaco, and will be recorded for later availability.

    There are additional valuable presentations that are coming up and will be helpful to those preparing proposals for this program.

    Posted at Jan 22, 2015 by Greg Monaco 0 Comments
    Internet2 Seeking Campuses to Visit to Assist with Campus Cyberinfrastructure
    Last Changed by Greg Monaco, Jan 22, 2015 14:52

    On behalf of Steve Wolff, Internet2:

    NSF has funded Internet2 to lead site visits to non-research-intensive institutions that are actual or potential participants in NSF Campus Cyberinfrastructure programs.

    Site visit teams will be able to consult with campus representatives on technical topics such as creation and implementation of a campus cyberinfrastructure plan or deployment of facilities (such as a Science DMZ) to support data-intensive scholarship.  Non-technical topics such as developing relationships with data-intensive scholars on campus or preparing a competitive cyberinfrastructure NSF proposal can also be covered.

    A site visit will be tuned to the campus’ specific needs.  We shall send you a questionnaire asking broadly what you hope the visit will achieve.  On the basis of the returned questionnaire we shall select community members with the requisite skills to make up the team.  Before the visit, there will be a conference call between appropriate campus representatives and the visiting team, to refine further the visit agenda.

    This invitation is extended to all institutions eligible to receive a Campus Cyberinfrastructure award from NSF.  Actual receipt of an award is not required.  Internet2 membership is not required.  NSF is supporting up to 30 site visits; if there are more than 30 requests Internet2 will select campuses to visit according to criteria agreed by NSF, but NSF will not be otherwise involved in the decisions.  Visits will normally be for 1 1/2 days and be at no cost to the campus.

    If you wish to request a site visit (or if you have questions) please write to Internet2 Research Support <rs@internet2>.

    To help us in scheduling, please send your visit request by 31 March 2015.  However, if you are planning to respond to NSF’s CC*DNI solicitation (deadline 24 March) and would like a site visit before submitting your proposal, please let us know before 09 February and we will try to oblige.

    Posted at Jan 22, 2015 by Greg Monaco 0 Comments
      2015/01/20
    Applications for DataQ Editorial Team Due January 30th!
    Last Changed by Greg Monaco, Jan 20, 2015 14:44

    Applications for DataQ Editorial Team Due January 30th!

    Applications for the DataQ Editorial Team are due January 30, 2015. If you are interested in becoming a DataQ Editor, please fill out the application form here: http://bit.ly/DataQApp.

    Information about the DataQ project: The University of Colorado Boulder Libraries, the Greater Western Library Alliance, and the Great Plains Network are excited to announce that we have received funding from the Institute of Museum and Library Services to develop an online resource called DataQ, which will function as a collaborative knowledge-base of research data questions and answers curated for and by the library community. Library staff from any institution may submit questions on research data topics to the DataQ website, where questions will then be both crowd-sourced and reviewed by an Editorial Team of experts. Answers to these questions, from both the community and the Editorial Team, will be posted to the DataQ website and will include links to resources and tools, best practices, and practical approaches to working with researchers to address specific research data issues.

    DataQ Editor responsibilities: DataQ Editors will be responsible for helping to identify initial content, providing expert feedback on questions from DataQ users, and developing policies and procedures for answering questions. The Editorial Team will participate in regular virtual meetings and attend one in-person meeting in Kansas City, MO in late May. Each Editor will receive a $1000 stipend to help cover travel costs and time contributed to the project. The initial term for each Editor will last until October 31, 2015 when the grant period ends, but there may be opportunities to continue serving beyond the life of the grant based on the outcome of the project.
    Additional opportunities to contribute to DataQ will be announced soon. For all of the latest information about DataQ, please follow @ResearchDataQ on Twitter. Please send any questions about DataQ to the project Co-PIs Andrew Johnson at andrew.m.johnson@colorado.edu and Megan Bresnahan at megan.bresnahan@tufts.edu.

    Posted at Jan 20, 2015 by Greg Monaco 0 Comments
      2015/01/16
    Big Bang Machine on TV
    Last Changed by Greg Monaco, Jan 16, 2015 14:37

    NOVA on PBS recently broadcast a program, entitled The Big Bang Machine. The program is a great introduction to

    • Large-scale research collaborations,
    • Development of the Large Hadron Collider,
    • Higgs field and its relevance to understanding mass of particles,
    • Why finding the Higgs boson mattered,
    • Role of the LHC in discovering the Higgs boson.

    The producers have packed a lot of detail into the one-hour program, with explanations of how the LHC works and why it matters.  They also recount the short-circuit disaster that occurred nine days after the LHC went online, releasing five tons of helium and frying 50 of the LHC magnets that make the accelerator work.  

    Since the collider is built to crash protons into one another, it's remarkable to learn that most of the time the protons whiz pass without event.  Melissa Franklin of Harvard explains that the out of billions of opportunities there are only about 20 crashes.  

    The producers also do a very nice job of explaining why it's so hard to find Higgs and the properties of the LHC that are necessary to discover particles that have short life spans and unknown characteristics.

    In the section of the program on announcing the discovery of the Higgs boson, it becomes apparent how the CMS and Atlas detectors complement one another and produced mutually confirming results.  

    The last 15 minutes of the program take up super-symmetry and the question of "Why is there matter, at all?"

    If you missed it, you can watch the program at http://video.pbs.org/video/2365402221/.

    Posted at Jan 16, 2015 by Greg Monaco 0 Comments
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